We describe a new electrostatic particle-in-cell (PIC) code in curvilinear geometry called curvilinear PIC (CPIC). The code models the microscopic (kinetic) evolution of a plasma with the PIC method, ...

scCello enhances transcriptome foundation models (TFMs) by integrating cell ontology graphs into pre-training, addressing the limitation of treating cells as independent entities. By incorporating ...

Learning Molecular Representation in a Cell InfoAlign learns molecular representations from bottleneck information derived from molecular structures, cell morphology, and gene expressions. For more ...

Molecular dynamics (MD) simulations generate extensive data sets that demand reliable and reproducible analysis tools. In this study, we present DynamiSpectra, a Python-based software package and web ...