BAM files should be indexed. Run as indicated below. $ nextflow run tron-bioinformatics/tronflow-hla-hd --help N E X T F L O W ~ version 19.07.0 Launching `main.nf ...

I'm working with GroupChatOrchestration and StructuredOutputTransform to get structured JSON output from a group chat between AI agents. While the orchestration works correctly and the agents ...