“The aircraft came to a stop without any injuries to those on board, however, it became disabled on the runway, causing the runway’s temporary closure,” airport officials said in a statement.

Travelers were still facing delays at San Diego International Airport throughout Thursday, after a private jet emergency shut down the runway Wednesday night.

A series of issues involving the aging U.S. air traffic control system prompted Congress in July to award an initial $12.5 billion in funding to overhaul the system that FAA leaders say is having tec...